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- A. Q. Khan Research Laboratories (KRL) (Kahuta) – nuclear weapon research and development; uranium enrichment
- Atomic Energy Minerals Center (Lahore) – uranium and nuclear mineral resource development; runs ore pilot reprocessing plant; production of reactor fuel bundles
- Chagai Hills nuclear test site
- Chashma Nuclear Power Reactor (Chashma) – 300 megawatt power reactor
- Dera Ghazi Khan – uranium milling and conversion
- Karachi Nuclear Power Reactor (Kanupp) (Karachi)
- Khushab research reactor and heavy water production plant (Khushab)
- Multan heavy water production plant (Multan)
- New Labs plutonium reprocessing plant (Rawalpindi)
- Pakistan Atomic Energy Commission (PAEC) (Islamabad) – nuclear weapon research
- Pakistan Institute for Science and Technology (PINSTECH) (Islamabad) – research reactors used for tritium production research
- Sargodha airbase (Sargodha) – possible nuclear weapon storage site
- Sihala – possible site of pilot-scale uranium enrichment centrifuge plant
- Tumman Leghani – reported new uranium mine (southern Punjab)